C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186894 Trip12-004 ENSMUSG00000026219 10090 - 1:84754403-84839304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverOvaryPlacentaTestisENSMUST00000186894
Transcript ID Colon Heart Liver Ovary Placenta Testis
ENSMUST00000186894 2.670±0.48 3.949±0.20 2.440±0.00 2.966±0.00 26.289±2.74 22.720±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087W CIL_00087W_0002 VISTA 1:84248810-84851347
CIL_00076T CIL_00076T_0002 CGP 1:84369839-84840516
CIL_00076Q CIL_00076Q_0002 CGP 1:84721189-84900487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 IBA cytoplasm
GO:0006281 IEA DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0009790 IMP embryo development
GO:0016874 IEA ligase activity
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1901315 ISS negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 ISS negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145863 trip12-001 protein_coding Danio_rerio 0 200
ENSDART00000138552 trip12-002 protein_coding Danio_rerio 0 196
ENST00000283943 TRIP12-001 protein_coding Homo_sapiens 0 3589
ENST00000343290 TRIP12-014 protein_coding Homo_sapiens 0 580
ENST00000389044 TRIP12-004 protein_coding Homo_sapiens 0 3326
ENST00000389045 TRIP12-005 protein_coding Homo_sapiens 0 2857
ENST00000409677 TRIP12-003 protein_coding Homo_sapiens 0 1567
ENST00000428959 TRIP12-008 protein_coding Homo_sapiens 0 773
ENST00000430954 TRIP12-007 protein_coding Homo_sapiens 0 503
ENST00000435716 TRIP12-006 protein_coding Homo_sapiens 0 798
ENST00000453485 TRIP12-009 protein_coding Homo_sapiens 0 497
ENST00000477441 TRIP12-010 retained_intron Homo_sapiens 0 601
ENST00000479037 TRIP12-002 retained_intron Homo_sapiens 0 3707
ENST00000487178 TRIP12-011 retained_intron Homo_sapiens 0 894

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