C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186914 Srrm2-004 ENSMUSG00000039218 10090 + 17:23819308-23822528 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000186914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000186914 77.462±15.83 212.816±16.89 88.210±3.37 112.693±22.98 146.177±19.27 111.427±12.89 34.424±5.39 45.638±15.59 33.468±12.53 103.331±5.31 163.162±21.70 20.159±2.82 40.952±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0002 CGP 17:23790662-23829109

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301740 SRRM2-001 protein_coding Homo_sapiens 0 2453
ENST00000570705 SRRM2-025 retained_intron Homo_sapiens 0 351
ENST00000571041 SRRM2-024 retained_intron Homo_sapiens 3e-30 135
ENST00000572721 SRRM2-021 processed_transcript Homo_sapiens 0 1018
ENST00000572883 SRRM2-020 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000574593 SRRM2-022 processed_transcript Homo_sapiens 0 763
ENST00000576878 SRRM2-026 retained_intron Homo_sapiens 0 431

Loading