C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat (in FLII) interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187532 Lrrfip1-011 ENSMUSG00000026305 10090 + 1:91125356-91128178 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000187532
Transcript ID Brain
ENSMUST00000187532 39.396±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944
CIL_0003XV CIL_0003XV_0002 CGP 1:90998737-91170795

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308482 LRRFIP1-002 protein_coding Homo_sapiens 0 231
ENST00000464608 LRRFIP1-015 retained_intron Homo_sapiens 0 231
ENST00000474195 LRRFIP1-010 retained_intron Homo_sapiens 0 231
ENST00000478958 LRRFIP1-008 retained_intron Homo_sapiens 0 231
ENST00000489603 LRRFIP1-016 processed_transcript Homo_sapiens 5e-28 128

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