C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 5A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188454 Slco5a1-001 ENSMUSG00000025938 10090 - 1:12866549-12992650 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000188454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000188454 0.098±0.07 0.081±0.04 0.031±0.02 1.684±1.76 0.622±0.29 0.060±0.03 1.532±0.33 0.039±0.04 0.008±0.01 0.593±0.10 1.855±0.45 0.282±0.09 0.434±0.24 0.148±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087Y CIL_00087Y_0002 VISTA 1:12314812-12917322
CIL_0001S3 CIL_0001S3_0003 CGP 1:12692277-12992650
CIL_0003BE CIL_0003BE_0002 CGP 1:12866549-13127163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005215 IEA transporter activity
GO:0005575 ND cellular_component
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127136 SLCO5A1 (2 of 2)-201 protein_coding Danio_rerio 0 518
ENSDART00000135529 SLCO5A1 (2 of 2)-003 protein_coding Danio_rerio 0 503
ENST00000260126 SLCO5A1-001 protein_coding Homo_sapiens 0 3179
ENST00000524945 SLCO5A1-004 protein_coding Homo_sapiens 0 2248
ENST00000526750 SLCO5A1-005 nonsense_mediated_decay Homo_sapiens 0 1118
ENST00000528658 SLCO5A1-002 processed_transcript Homo_sapiens 0 1051
ENST00000530307 SLCO5A1-006 protein_coding Homo_sapiens 0 1323
ENST00000532388 SLCO5A1-003 retained_intron Homo_sapiens 0 1282

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