C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28539
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190050 RP23-357J7.8-001 ENSMUSG00000099908 10090 + 16:18836584-18956247 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000190050
Transcript ID Adrenal
ENSMUST00000190050 5.289±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0005F0 CIL_0005F0_0002 CGP 16:18836584-18956247

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006215 hira-201 protein_coding Danio_rerio 0 771
ENSDART00000132164 hira-001 protein_coding Danio_rerio 0 771
ENST00000263208 HIRA-001 protein_coding Homo_sapiens 0 3121
ENST00000340170 HIRA-002 protein_coding Homo_sapiens 0 2307
ENST00000452818 HIRA-004 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000464189 HIRA-003 processed_transcript Homo_sapiens 0 649
ENST00000509549 C22orf39-003 nonsense_mediated_decay Homo_sapiens 0 3784

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