C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cell cycle regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340170 HIRA-002 ENSG00000100084 9606 - 22:19330698-19431696 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0009653 TAS anatomical structure morphogenesis
GO:0016568 IEA chromatin modification
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004222 Hira-001 protein_coding Mus_musculus 0 2593
ENSMUST00000153397 Hira-003 nonsense_mediated_decay Mus_musculus 0 2350
ENSMUST00000190050 RP23-357J7.8-001 nonsense_mediated_decay Mus_musculus 0 2307
ENSMUST00000120532 Hira-002 protein_coding Mus_musculus 0 1886
ENSMUST00000128321 Hira-004 retained_intron Mus_musculus 0 1009
ENSDART00000006215 hira-201 protein_coding Danio_rerio 0 776
ENSDART00000132164 hira-001 protein_coding Danio_rerio 0 776
ENSMUST00000131444 Hira-006 retained_intron Mus_musculus 0 743
ENSMUST00000144609 Hira-005 retained_intron Mus_musculus 0 588
ENSMUST00000150799 Hira-008 processed_transcript Mus_musculus 0 265

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