C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HIR histone cell cycle regulation defective homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000006215 hira-201 ENSDARG00000013434 7955 - 5:19635931-19660886 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSDART00000006215
Transcript ID Liver Muscle
ENSDART00000006215 0.112±0.00 1.461±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004222 Hira-001 protein_coding Mus_musculus 0 815
ENSMUST00000120532 Hira-002 protein_coding Mus_musculus 0 767
ENSMUST00000128321 Hira-004 retained_intron Mus_musculus 0 418
ENSMUST00000153397 Hira-003 nonsense_mediated_decay Mus_musculus 0 726
ENSMUST00000190050 RP23-357J7.8-001 nonsense_mediated_decay Mus_musculus 0 771
ENST00000263208 HIRA-001 protein_coding Homo_sapiens 0 776
ENST00000340170 HIRA-002 protein_coding Homo_sapiens 0 776
ENST00000452818 HIRA-004 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000464189 HIRA-003 processed_transcript Homo_sapiens 0 248
ENST00000509549 C22orf39-003 nonsense_mediated_decay Homo_sapiens 0 732

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