C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190686 Srrm2-002 ENSMUSG00000039218 10090 + 17:23803187-23824736 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190686 28.675±16.04 39.801±3.76 65.376±4.17 67.317±22.14 27.588±4.10 21.079±0.12 7.973±3.05 19.944±8.15 19.749±9.06 26.279±1.60 22.872±4.19 54.090±15.04 25.800±15.99 21.766±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0002 CGP 17:23790662-23829109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301740 SRRM2-001 protein_coding Homo_sapiens 0 5033
ENST00000570539 SRRM2-032 protein_coding Homo_sapiens 6e-27 124
ENST00000570655 SRRM2-015 retained_intron Homo_sapiens 0 217
ENST00000570705 SRRM2-025 retained_intron Homo_sapiens 0 357
ENST00000570971 SRRM2-013 protein_coding Homo_sapiens 0 937
ENST00000571041 SRRM2-024 retained_intron Homo_sapiens 0 357
ENST00000571372 SRRM2-030 retained_intron Homo_sapiens 5e-23 111
ENST00000571378 SRRM2-007 protein_coding Homo_sapiens 0 2318
ENST00000572278 SRRM2-017 processed_transcript Homo_sapiens 0 444
ENST00000572721 SRRM2-021 processed_transcript Homo_sapiens 0 414
ENST00000572883 SRRM2-020 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000572952 SRRM2-018 retained_intron Homo_sapiens 0 874
ENST00000573311 SRRM2-023 retained_intron Homo_sapiens 0 538
ENST00000573451 SRRM2-014 retained_intron Homo_sapiens 0 300
ENST00000573498 SRRM2-016 retained_intron Homo_sapiens 0 603
ENST00000573583 SRRM2-033 processed_transcript Homo_sapiens 9e-26 121
ENST00000573692 SRRM2-031 nonsense_mediated_decay Homo_sapiens 0.000000004 66
ENST00000574331 SRRM2-010 retained_intron Homo_sapiens 2e-26 124
ENST00000574340 SRRM2-012 protein_coding Homo_sapiens 0 604
ENST00000574593 SRRM2-022 processed_transcript Homo_sapiens 0 1112
ENST00000575009 SRRM2-006 protein_coding Homo_sapiens 0 1098
ENST00000575701 SRRM2-011 retained_intron Homo_sapiens 0 725
ENST00000575870 SRRM2-029 processed_transcript Homo_sapiens 0 562
ENST00000576415 SRRM2-028 protein_coding Homo_sapiens 0 444
ENST00000576674 SRRM2-019 processed_transcript Homo_sapiens 0 540
ENST00000576878 SRRM2-026 retained_intron Homo_sapiens 0 353
ENST00000576894 SRRM2-004 retained_intron Homo_sapiens 0 725
ENST00000576924 SRRM2-003 protein_coding Homo_sapiens 0 2911

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