C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000000442 ESRRA-002 ENSG00000173153 9606 + 11:64305578-64316738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungMusclePlacentaENST00000000442
Transcript ID Breast Colon Kidney Liver Lung Muscle Placenta
ENST00000000442 3.025±0.00 6.471±0.00 23.447±0.00 2.109±0.00 1.197±0.00 6.314±0.00 16.783±4.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0019904 IPI protein domain specific binding
GO:0030522 TAS intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045171 IDA intercellular bridge
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025906 Esrra-001 protein_coding Mus_musculus 0 2676
ENSMUST00000173635 Esrra-005 protein_coding Mus_musculus 0 824
ENSMUST00000145192 Esrra-003 retained_intron Mus_musculus 0 566
ENSMUST00000173308 Esrra-004 processed_transcript Mus_musculus 0 483
ENSMUST00000172975 Esrra-002 protein_coding Mus_musculus 0 436
ENSDART00000007600 esrrb-201 protein_coding Danio_rerio 0 252
ENSMUST00000088257 Trmt112-001 protein_coding Mus_musculus 2e-18 99

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