C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000007600 esrrb-201 ENSDARG00000040151 7955 + 17:52843627-52916658 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000007600
Transcript ID Brain Heart Liver Muscle
ENSDART00000007600 1.344±0.00 0.192±0.07 0.058±0.00 1.425±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M1 CIL_0007M1_0003 UCNEbase 17:52633941-53008451

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005496 IEA steroid binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021680 Esrrb-006 protein_coding Mus_musculus 0 671
ENSMUST00000025906 Esrra-001 protein_coding Mus_musculus 0 243
ENSMUST00000110204 Esrrb-002 protein_coding Mus_musculus 0 671
ENSMUST00000116402 Esrrb-001 protein_coding Mus_musculus 0 671
ENSMUST00000145192 Esrra-003 retained_intron Mus_musculus 5e-24 115
ENSMUST00000167891 Esrrb-005 protein_coding Mus_musculus 0 673
ENST00000000442 ESRRA-002 protein_coding Homo_sapiens 0 252
ENST00000380887 ESRRB-003 protein_coding Homo_sapiens 0 856
ENST00000405666 ESRRA-003 protein_coding Homo_sapiens 0 252
ENST00000406310 ESRRA-001 protein_coding Homo_sapiens 0 252
ENST00000468670 ESRRA-004 protein_coding Homo_sapiens 3e-27 126
ENST00000505752 ESRRB-001 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000507951 ESRRB-005 processed_transcript Homo_sapiens 0 372
ENST00000509242 ESRRB-201 protein_coding Homo_sapiens 0 856
ENST00000509323 ESRRB-004 processed_transcript Homo_sapiens 0 267
ENST00000512784 ESRRB-002 protein_coding Homo_sapiens 0 854
ENST00000556177 ESRRB-006 protein_coding Homo_sapiens 0 863

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