C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000011473 SYPL1-001 ENSG00000008282 9606 - 7:106090505-106112576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyOvaryPlacentaTestisENST00000011473
Transcript ID Adipose Brain Breast Kidney Ovary Placenta Testis
ENST00000011473 4.763±0.00 2.578±0.00 5.612±0.00 3.751±0.00 10.226±4.57 3.778±0.00 37.195±9.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005887 TAS integral component of plasma membrane
GO:0006810 IEA transport
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0016021 TAS integral component of membrane
GO:0030141 IEA secretory granule
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076698 Sypl-001 protein_coding Mus_musculus 0 1181
ENSMUST00000020885 Sypl-002 protein_coding Mus_musculus 0 1149
ENSMUST00000131562 Sypl-003 retained_intron Mus_musculus 0 315
ENSMUST00000139339 Sypl-006 processed_transcript Mus_musculus 0 272
ENSMUST00000129592 Sypl-004 processed_transcript Mus_musculus 0 254
ENSMUST00000122861 Sypl-005 nonsense_mediated_decay Mus_musculus 0 241

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