C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000040584 HOXC8-001 ENSG00000037965 9606 + 12:54009106-54012362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000040584
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000040584 4.645±0.00 1.804±0.00 0.687±0.00 6.374±0.00 0.182±0.15 0.017±0.00 2.959±0.00 0.047±0.00 2.526±2.26 4.957±6.28 0.947±0.34 2.353±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TN CIL_0002TN_0002 CGP 12:53994895-54012362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0015630 IDA microtubule cytoskeleton
GO:0030182 IEA neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048705 IEA skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001703 Hoxc8-001 protein_coding Mus_musculus 0 1653
ENSMUST00000189484 Hoxc8-002 retained_intron Mus_musculus 0 739

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