C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189484 Hoxc8-002 ENSMUSG00000001657 10090 + 15:102991889-102994111 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000189484
Transcript ID Bladder Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000189484 0.058±0.03 0.366±0.11 0.028±0.00 0.154±0.06 2.914±0.65 0.253±0.36 0.037±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TN CIL_0002TN_0003 CGP 15:102976439-102994111
CIL_00049I CIL_00049I_0002 CGP 15:102990607-103011881

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000040584 HOXC8-001 protein_coding Homo_sapiens 0 739

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