C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092809-ENSDARG00000070346 CGP 7955 23:36146804-36155179
GeneTranscriptPositionBiotype
ENSDARG00000070346 (hoxc8a)
homeo box C8a 		ENSDART00000103139 (hoxc8a-001) 36152729-36155179 protein_coding
ENSDARG00000070348 (hoxc10a)
homeo box C10a 		ENSDART00000053295 (hoxc10a-201) 36135161-36149312 protein_coding
ENSDART00000130260 (hoxc10a-001) 36135161-36138138 protein_coding
ENSDARG00000092809 (hoxc9a)
homeo box C9a 		ENSDART00000127384 (hoxc9a-001) 36146804-36149032 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180806-ENSG00000037965 CGP 9606 12:53994895-54012362
GeneTranscriptPositionBiotype
ENSG00000037965 (HOXC8)
homeobox C8 		ENST00000040584 (HOXC8-001) 54009106-54012362 protein_coding
ENSG00000180806 (HOXC9)
homeobox C9 		ENST00000303450 (HOXC9-001) 54000119-54003337 protein_coding
ENST00000504557 (HOXC9-003) 53994895-54002888 processed_transcript
ENST00000508190 (HOXC9-002) 53995509-54003298 protein_coding
ENSG00000250451 (HOXC-AS1)
HOXC cluster antisense RNA 1 		ENST00000505700 (HOXC-AS1-001) 53999022-54000010 antisense
ENST00000512427 (HOXC-AS1-002) 53999022-53999620 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002TN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036139-ENSMUSG00000001657 CGP 10090 15:102976439-102994111
GeneTranscriptPositionBiotype
ENSMUSG00000001657 (Hoxc8)
homeobox C8 		ENSMUST00000001703 (Hoxc8-001) 102990607-102993821 protein_coding
ENSMUST00000189484 (Hoxc8-002) 102991889-102994111 retained_intron
ENSMUSG00000036139 (Hoxc9)
homeobox C9 		ENSMUST00000001706 (Hoxc9-001) 102977032-102985099 protein_coding
ENSMUST00000173306 (Hoxc9-002) 102976439-102981669 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TN_0001ENSDARG00000070346ENSDART00000103139ENSDARG00000070348ENSDART00000053295ENSDART00000130260ENSDARG00000092809ENSDART00000127384CIL_0002TN_0002ENSG00000037965ENST00000040584ENSG00000180806ENST00000303450ENST00000504557ENST00000508190ENSG00000250451ENST00000505700ENST00000512427CIL_0002TN_0003ENSMUSG00000001657ENSMUST00000001703ENSMUST00000189484ENSMUSG00000036139ENSMUST00000001706ENSMUST00000173306
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TN_0001ENSDARG00000070346ENSDART00000103139ENSDARG00000070348ENSDART00000053295ENSDART00000130260ENSDARG00000092809ENSDART00000127384CIL_0002TN_0002ENSG00000037965ENST00000040584ENSG00000180806ENST00000303450ENST00000504557ENSG00000250451ENST00000505700ENST00000512427CIL_0002TN_0003ENSMUSG00000001657ENSMUST00000001703ENSMUST00000189484ENSMUSG00000036139ENSMUST00000001706ENSMUST00000173306
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070346 ENSDART00000103139 N/A N/A N/A N/A N/A N/A N/A 1.063±0.00 N/A N/A 6.581±0.00 N/A N/A N/A
ENSDARG00000070348 ENSDART00000053295 N/A N/A N/A 0.022±0.00 N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000130260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.671±0.00 N/A N/A N/A
ENSDARG00000092809 ENSDART00000127384 N/A N/A N/A 0.145±0.00 N/A N/A 0.377±0.00 N/A N/A N/A 1.693±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000037965 ENST00000040584 4.645±0.00 1.804±0.00 0.687±0.00 N/A 6.374±0.00 0.182±0.15 0.017±0.00 2.959±0.00 N/A 0.047±0.00 2.526±2.26 4.957±6.28 0.947±0.34 2.353±1.08
ENSG00000180806 ENST00000303450 9.746±0.00 N/A N/A N/A 4.995±0.00 N/A N/A N/A N/A N/A N/A N/A 2.032±0.75 7.326±0.00
ENST00000504557 N/A N/A 5.839±0.00 N/A N/A N/A N/A N/A 0.363±0.00 N/A 2.579±0.00 N/A N/A 3.368±0.00
ENST00000508190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250451 ENST00000505700 3.956±0.00 1.192±0.00 N/A N/A 2.202±0.00 0.203±0.00 N/A 0.574±0.00 N/A N/A 2.934±1.20 1.024±0.60 0.241±0.06 0.905±0.70
ENST00000512427 N/A N/A 1.435±0.00 N/A N/A 0.040±0.00 N/A 1.107±0.00 N/A N/A N/A 2.670±0.00 0.258±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001657 ENSMUST00000001703 11.249±7.05 10.458±2.65 0.137±0.07 0.010±0.00 9.468±3.59 0.073±0.05 N/A 1.598±0.35 0.052±0.07 0.027±0.01 0.232±0.08 5.395±1.20 1.069±1.19 0.137±0.05
ENSMUST00000189484 N/A N/A 0.058±0.03 N/A N/A N/A N/A 0.366±0.11 0.028±0.00 N/A 0.154±0.06 2.914±0.65 0.253±0.36 0.037±0.03
ENSMUSG00000036139 ENSMUST00000001706 N/A 3.001±1.23 0.140±0.05 0.008±0.00 8.764±5.67 0.093±0.03 0.015±0.00 2.707±1.17 0.038±0.02 0.015±0.00 1.209±0.24 6.230±2.35 0.198±0.16 1.219±0.45
ENSMUST00000173306 N/A N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A

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