C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated PDZ and coiled-coil motif containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000052569 GOPC-001 ENSG00000047932 9606 - 6:117560269-117602528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000052569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000052569 4.299±0.00 3.464±0.00 3.654±0.00 2.113±0.00 3.612±0.04 5.031±1.75 1.114±0.14 2.020±0.45 4.989±1.87 6.819±0.00 8.545±2.16 5.453±1.54 9.808±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005XO CIL_0005XO_0001 CGP 6:117265558-117425855
CIL_0001EK CIL_0001EK_0002 CGP 6:117318211-117602542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 NAS plasma membrane
GO:0006888 NAS ER to Golgi vesicle-mediated transport
GO:0006893 NAS Golgi to plasma membrane transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030140 NAS trans-Golgi network transport vesicle
GO:0042995 IEA cell projection
GO:0043004 NAS cytoplasmic sequestering of CFTR protein
GO:0043234 IDA protein complex
GO:0044325 IPI ion channel binding
GO:0045176 NAS apical protein localization
GO:0045211 IEA postsynaptic membrane
GO:0051260 IPI protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020008 Gopc-201 protein_coding Mus_musculus 0 1965
ENSMUST00000105475 Gopc-202 protein_coding Mus_musculus 0 1871

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