C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000075430 CTDP1-002 ENSG00000060069 9606 + 18:79679846-79754503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000075430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000075430 5.618±0.00 6.577±0.00 0.367±0.00 2.101±1.80 4.287±0.00 1.897±0.27 0.884±0.73 5.425±0.00 1.607±0.00 1.604±1.24 2.672±1.85 2.469±2.39 2.856±0.26 10.774±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0003899 TAS DNA-directed RNA polymerase activity
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005819 IDA spindle
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006470 IDA protein dephosphorylation
GO:0008420 IDA CTD phosphatase activity
GO:0010458 IMP exit from mitosis
GO:0010467 TAS gene expression
GO:0015629 IDA actin cytoskeleton
GO:0016032 TAS viral process
GO:0030496 IDA midbody
GO:0050434 TAS positive regulation of viral transcription
GO:0051233 IDA spindle midzone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036229 Ctdp1-001 protein_coding Mus_musculus 0 627
ENSDART00000111517 ctdp1-201 protein_coding Danio_rerio 0 486
ENSDART00000148516 ctdp1-001 protein_coding Danio_rerio 0 486
ENSMUST00000161003 Ctdp1-003 protein_coding Mus_musculus 1e-32 147

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