C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000060069 CTDP1 9606 + 18:79679801-79756623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000075430 CTDP1-002 79679846-79754503 protein_coding
  ENST00000299543 CTDP1-201 79681430-79754510 protein_coding
  ENST00000585951 CTDP1-006 79736353-79749997 processed_transcript
  ENST00000587623 CTDP1-007 79681459-79685591 processed_transcript
  ENST00000590599 CTDP1-004 79735610-79754501 retained_intron
  ENST00000590635 CTDP1-005 79680849-79697960 protein_coding
  ENST00000591598 CTDP1-003 79680152-79754503 protein_coding
  ENST00000613122 CTDP1-001 79679801-79756623 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000075430ENST00000299543ENST00000590599ENST00000590635ENST00000591598ENST00000613122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000075430 5.618±0.00 6.577±0.00 0.367±0.00 2.101±1.80 4.287±0.00 1.897±0.27 0.884±0.73 5.425±0.00 1.607±0.00 1.604±1.24 2.672±1.85 2.469±2.39 2.856±0.26 10.774±0.00
ENST00000299543 2.442±0.00 3.188±0.00 0.504±0.00 0.706±0.03 1.259±0.67 0.988±0.00 0.640±0.35 0.641±0.00 1.263±0.16 1.514±0.00 N/A 2.827±1.40 4.761±0.80 14.254±5.41
ENST00000590599 N/A N/A N/A N/A N/A 0.944±0.00 N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A
ENST00000590635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.253±0.00 N/A N/A N/A
ENST00000591598 N/A 2.076±0.00 N/A N/A N/A 0.645±0.00 0.872±0.00 N/A N/A 0.781±0.00 1.511±0.00 2.945±0.00 3.210±0.00 7.948±0.00
ENST00000613122 N/A N/A N/A N/A 0.191±0.00 N/A N/A 0.481±0.31 0.326±0.00 0.194±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0001 VISTA 18:79552100-80156263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0003899 TAS DNA-directed RNA polymerase activity
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005819 IDA spindle
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006470 IDA protein dephosphorylation
GO:0008420 IDA CTD phosphatase activity
GO:0010458 IMP exit from mitosis
GO:0010467 TAS gene expression
GO:0015629 IDA actin cytoskeleton
GO:0016032 TAS viral process
GO:0016311 IEA dephosphorylation
GO:0030496 IDA midbody
GO:0050434 TAS positive regulation of viral transcription
GO:0051233 IDA spindle midzone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017522 ctdp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein_coding Danio_rerio
ENSMUSG00000033323 Ctdp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein_coding Mus_musculus

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