C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036229 Ctdp1-001 ENSMUSG00000033323 10090 - 18:80407959-80469695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036229 5.006±2.10 5.802±0.45 4.474±0.03 7.081±1.19 5.849±2.17 7.716±1.24 1.997±0.31 3.984±0.72 3.854±2.08 7.839±1.51 1.900±0.47 9.145±2.14 6.694±2.48 3.129±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0001P4 CIL_0001P4_0002 CGP 18:80294546-80469695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0005819 ISS spindle
GO:0006470 ISS protein dephosphorylation
GO:0008420 IEA CTD phosphatase activity
GO:0010458 ISS exit from mitosis
GO:0015629 IEA actin cytoskeleton
GO:0030496 ISS midbody
GO:0051233 ISS spindle midzone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000075430 CTDP1-002 protein_coding Homo_sapiens 0 627
ENST00000299543 CTDP1-201 protein_coding Homo_sapiens 0 977
ENST00000590599 CTDP1-004 retained_intron Homo_sapiens 5e-33 147
ENST00000591598 CTDP1-003 protein_coding Homo_sapiens 0 822
ENST00000613122 CTDP1-001 protein_coding Homo_sapiens 0 977

Loading