C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: p53 and DNA-damage regulated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000202017 PDRG1-001 ENSG00000088356 9606 - 20:31944342-31952092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000202017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000202017 2.563±0.00 6.636±0.00 0.444±0.00 4.455±3.14 2.396±1.55 3.117±2.70 1.581±1.50 4.576±4.27 1.843±1.59 3.452±3.31 1.028±0.56 9.388±7.09 9.440±1.83 34.941±12.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001AB CIL_0001AB_0001 CGP 20:31847637-31944963
CIL_0001KI CIL_0001KI_0001 CGP 20:31870702-31952092
CIL_0001KH CIL_0001KH_0001 CGP 20:31944342-32003387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028972 Pdrg1-001 protein_coding Mus_musculus 0 527
ENSMUST00000150545 Pdrg1-003 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000151392 Pdrg1-008 retained_intron Mus_musculus 0 316

Loading