C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin-B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000204961 EFNB1-001 ENSG00000090776 9606 + X:68828997-68842147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000204961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000204961 95.179±0.00 8.522±0.00 0.611±0.00 1.738±1.14 10.685±8.30 8.854±6.47 3.795±2.37 13.389±12.61 3.338±0.06 16.388±12.65 1.268±0.87 15.953±9.31 40.758±4.91 6.777±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U1 CIL_0001U1_0001 CGP X:68647666-68842147
CIL_0001TA CIL_0001TA_0001 CGP X:68828997-69165793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IEA neural crest cell migration
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IBA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007267 TAS cell-cell signaling
GO:0007411 IBA axon guidance
GO:0009880 IEA embryonic pattern specification
GO:0016020 IEA membrane
GO:0042102 IEA positive regulation of T cell proliferation
GO:0045121 IEA membrane raft
GO:0045202 ISS synapse
GO:0046875 IBA ephrin receptor binding
GO:0048013 IBA ephrin receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052839 Efnb1-001 protein_coding Mus_musculus 0 2942
ENSMUST00000151750 Efnb1-002 processed_transcript Mus_musculus 0 761

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