C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: X-box binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216037 XBP1-001 ENSG00000100219 9606 - 22:28794555-28800597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216037 28.746±0.00 84.634±0.00 1.968±0.00 8.725±5.13 51.226±18.38 30.480±17.82 15.407±11.55 96.211±34.85 130.748±126.70 46.432±35.70 49.434±0.00 42.825±28.02 27.618±6.91 28.592±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0001 VISTA 22:28282570-28883176
CIL_0004TU CIL_0004TU_0002 CGP 22:28794555-29057487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0002070 IEA epithelial cell maturation
GO:0003677 TAS:IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0031017 IEA exocrine pancreas development
GO:0042493 IEA response to drug
GO:0042593 IEA glucose homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0044267 TAS cellular protein metabolic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051602 IEA response to electrical stimulus
GO:0060096 IEA serotonin secretion, neurotransmission
GO:0060691 IEA epithelial cell maturation involved in salivary gland development
GO:0071236 IEA cellular response to antibiotic
GO:1900103 IMP positive regulation of endoplasmic reticulum unfolded protein response
GO:1901800 IEA positive regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063084 Xbp1-001 protein_coding Mus_musculus 0 1251
ENSMUST00000149623 Xbp1-004 protein_coding Mus_musculus 0 778
ENSMUST00000149159 Xbp1-003 protein_coding Mus_musculus 0 529
ENSMUST00000145588 Xbp1-002 retained_intron Mus_musculus 0 318

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