C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: X-box binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100219 XBP1 9606 - 22:28794555-28800597 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216037 XBP1-001 28794555-28800597 protein_coding
  ENST00000344347 XBP1-007 28795175-28800524 protein_coding
  ENST00000403532 XBP1-006 28794557-28800558 protein_coding
  ENST00000405219 XBP1-003 28794589-28800133 protein_coding
  ENST00000482720 XBP1-005 28798906-28800569 retained_intron
  ENST00000484256 XBP1-004 28794559-28797045 retained_intron
  ENST00000611155 XBP1-201 28794560-28800572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216037ENST00000344347ENST00000482720ENST00000611155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216037 28.746±0.00 84.634±0.00 1.968±0.00 8.725±5.13 51.226±18.38 30.480±17.82 15.407±11.55 96.211±34.85 130.748±126.70 46.432±35.70 49.434±0.00 42.825±28.02 27.618±6.91 28.592±0.00
ENST00000344347 N/A N/A N/A N/A 20.740±0.00 9.302±0.00 17.922±0.00 33.065±0.00 N/A 75.328±0.00 N/A 55.889±46.76 54.280±29.04 N/A
ENST00000482720 N/A N/A 7.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.333±0.00 N/A
ENST00000611155 N/A N/A N/A N/A N/A N/A 1.948±0.00 N/A 4.671±0.00 14.745±0.00 3.395±0.00 23.664±0.00 34.401±20.26 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0001 VISTA 22:28282570-28883176
CIL_0004TU CIL_0004TU_0002 CGP 22:28794555-29057487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0002070 IEA epithelial cell maturation
GO:0003677 TAS:IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0031017 IEA exocrine pancreas development
GO:0042493 IEA response to drug
GO:0042593 IEA glucose homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0044267 TAS cellular protein metabolic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051602 IEA response to electrical stimulus
GO:0060096 IEA serotonin secretion, neurotransmission
GO:0060691 IEA epithelial cell maturation involved in salivary gland development
GO:0071236 IEA cellular response to antibiotic
GO:1900103 IMP positive regulation of endoplasmic reticulum unfolded protein response
GO:1901800 IEA positive regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035622 xbp1 X-box binding protein 1 protein_coding Danio_rerio
ENSMUSG00000020484 Xbp1 X-box binding protein 1 protein_coding Mus_musculus

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