C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphorylase, glycogen; brain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216962 PYGB-001 ENSG00000100994 9606 + 20:25248069-25298014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216962
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216962 40.835±0.00 42.508±0.00 2.152±0.00 40.434±33.68 27.898±21.83 23.964±12.40 40.366±29.19 13.666±12.28 14.813±11.11 8.787±5.22 2.779±2.31 39.387±24.04 15.882±2.57 35.529±19.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MT CIL_0004MT_0002 CGP 20:25195693-25298014
CIL_0004MU CIL_0004MU_0002 CGP 20:25248069-25390983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004645 IEA phosphorylase activity
GO:0005737 IDA cytoplasm
GO:0005975 TAS:IEA carbohydrate metabolic process
GO:0005980 NAS glycogen catabolic process
GO:0006006 TAS glucose metabolic process
GO:0008184 NAS:IEA glycogen phosphorylase activity
GO:0016020 IDA membrane
GO:0030170 IEA pyridoxal phosphate binding
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045441 Pygb-001 protein_coding Mus_musculus 0 3090
ENSMUST00000035269 Pygm-001 protein_coding Mus_musculus 0 1622
ENSMUST00000113483 Pygm-004 protein_coding Mus_musculus 0 1317
ENSDART00000077871 pygma-001 protein_coding Danio_rerio 0 1238
ENSMUST00000139938 Pygb-002 processed_transcript Mus_musculus 0 717
ENSMUST00000129610 Pygb-004 retained_intron Mus_musculus 0 534
ENSMUST00000154366 Pygb-003 retained_intron Mus_musculus 0 496
ENSMUST00000135717 Pygb-005 retained_intron Mus_musculus 0 418

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