C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031555 Lfng-201 ENSMUSG00000029570 10090 + 5:140607341-140615543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031555 31.297±3.73 20.412±2.21 9.944±1.48 12.885±7.53 71.840±34.82 22.679±1.67 6.033±1.25 11.058±0.84 6.525±3.88 47.611±12.43 1.580±0.66 17.011±7.71 1.396±0.73 0.462±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0002 VISTA 5:140361312-140964153
CIL_00027L CIL_00027L_0003 CGP 5:140563119-140615543
CIL_000558 CIL_000558_0002 CGP 5:140607341-140649031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001541 IMP ovarian follicle development
GO:0001756 IMP somitogenesis
GO:0007143 IMP female meiotic division
GO:0007386 IMP compartment pattern specification
GO:0008152 IEA metabolic process
GO:0008593 IDA regulation of Notch signaling pathway
GO:0014807 IMP regulation of somitogenesis
GO:0030173 IEA integral component of Golgi membrane
GO:0031982 IEA vesicle
GO:0032092 IDA positive regulation of protein binding
GO:0033829 IDA O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
GO:0045747 IDA positive regulation of Notch signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028673 lfng-001 protein_coding Danio_rerio 0 333
ENSDART00000138280 lfng-002 protein_coding Danio_rerio 0 224
ENST00000222725 LFNG-001 protein_coding Homo_sapiens 0 1264
ENST00000310496 RFNG-001 protein_coding Homo_sapiens 0 228
ENST00000338732 LFNG-201 protein_coding Homo_sapiens 0 902
ENST00000359574 LFNG-002 protein_coding Homo_sapiens 0 1079
ENST00000402045 LFNG-004 protein_coding Homo_sapiens 0 902
ENST00000402506 LFNG-003 protein_coding Homo_sapiens 0 900
ENST00000493850 LFNG-005 retained_intron Homo_sapiens 0 529
ENST00000582478 RFNG-002 retained_intron Homo_sapiens 0.000004 58
ENST00000614382 LFNG-202 protein_coding Homo_sapiens 0 900

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