C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000223865 TBC1D13-001 ENSG00000107021 9606 + 9:128787349-128810424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000223865
Transcript ID Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000223865 1.040±0.00 0.438±0.00 4.321±0.00 0.951±0.26 0.663±0.00 1.058±0.00 4.812±0.00 1.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W4 CIL_0006W4_0001 CGP 9:128729786-128810432
CIL_0005L7 CIL_0005L7_0001 CGP 9:128787204-128822677

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044556 Tbc1d13-001 protein_coding Mus_musculus 0 702
ENSMUST00000129789 Tbc1d13-007 processed_transcript Mus_musculus 0 488
ENSMUST00000134013 Tbc1d13-006 processed_transcript Mus_musculus 0 431
ENSMUST00000125142 Tbc1d13-005 processed_transcript Mus_musculus 0 220
ENSMUST00000136183 Tbc1d13-002 nonsense_mediated_decay Mus_musculus 3e-38 165
ENSMUST00000131261 Tbc1d13-003 nonsense_mediated_decay Mus_musculus 1e-32 147
ENSMUST00000150879 Tbc1d13-004 retained_intron Mus_musculus 1e-32 147

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