C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: receptor accessory protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233596 REEP6-001 ENSG00000115255 9606 + 19:1490747-1497927 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233596 4.681±0.00 2.392±0.00 0.509±0.00 4.332±4.11 9.467±9.23 0.995±0.61 0.781±0.00 20.469±9.99 119.217±118.97 0.231±0.18 0.621±0.00 9.298±6.37 4.319±1.20 173.988±33.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZH CIL_0000ZH_0001 CGP 19:1461143-1490752
CIL_00066P CIL_00066P_0001 CGP 19:1481428-1497927
CIL_0000ZJ CIL_0000ZJ_0001 CGP 19:1490747-1513604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005789 IEA endoplasmic reticulum membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0032386 IEA regulation of intracellular transport
GO:0044317 IEA rod spherule
GO:0045177 IEA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105355 Reep6-006 protein_coding Mus_musculus 0 503
ENSMUST00000105357 Reep6-002 protein_coding Mus_musculus 0 503
ENSMUST00000105354 Reep6-005 protein_coding Mus_musculus 0 496
ENSMUST00000105358 Reep6-001 protein_coding Mus_musculus 0 496
ENSMUST00000186864 Reep6-201 protein_coding Mus_musculus 0 451
ENSMUST00000153167 Reep6-004 retained_intron Mus_musculus 0 449
ENSMUST00000040081 Reep6-003 protein_coding Mus_musculus 0 390

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