C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00066P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115257-ENSG00000115255 CGP 9606 19:1481428-1497927
GeneTranscriptPositionBiotype
ENSG00000115255 (REEP6)
receptor accessory protein 6 		ENST00000233596 (REEP6-001) 1490747-1497927 protein_coding
ENST00000395479 (REEP6-003) 1495363-1497498 protein_coding
ENST00000395484 (REEP6-004) 1495476-1497721 nonsense_mediated_decay
ENST00000591735 (REEP6-002) 1491166-1496181 retained_intron
ENSG00000115257 (PCSK4)
proprotein convertase subtilisin/kexin type 4 		ENST00000300954 (PCSK4-001) 1481428-1490408 protein_coding
ENST00000441747 (PCSK4-003) 1481428-1490342 retained_intron
ENST00000586002 (PCSK4-011) 1483498-1484127 retained_intron
ENST00000586074 (PCSK4-005) 1481986-1482667 retained_intron
ENST00000586616 (PCSK4-002) 1481428-1490411 retained_intron
ENST00000587784 (PCSK4-007) 1487198-1490752 processed_transcript
ENST00000588195 (PCSK4-006) 1482411-1490405 retained_intron
ENST00000588671 (PCSK4-010) 1487218-1490377 protein_coding
ENST00000590057 (PCSK4-008) 1487293-1490737 processed_transcript
ENST00000591201 (PCSK4-004) 1481428-1490335 nonsense_mediated_decay
ENST00000591303 (PCSK4-012) 1482439-1483844 retained_intron
ENST00000591687 (PCSK4-009) 1487964-1490446 processed_transcript
ENST00000614078 (PCSK4-013) 1487848-1490184 retained_intron
CIL_00066P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020131-ENSMUSG00000035504 CGP 10090 10:80321283-80336441
GeneTranscriptPositionBiotype
ENSMUSG00000020131 (Pcsk4)
proprotein convertase subtilisin/kexin type 4 		ENSMUST00000020340 (Pcsk4-001) 80321283-80329498 protein_coding
ENSMUST00000128653 (Pcsk4-002) 80321283-80329455 nonsense_mediated_decay
ENSMUST00000130521 (Pcsk4-006) 80321287-80323127 retained_intron
ENSMUST00000135071 (Pcsk4-003) 80322122-80329399 nonsense_mediated_decay
ENSMUST00000137177 (Pcsk4-004) 80321283-80329453 retained_intron
ENSMUST00000147132 (Pcsk4-005) 80321287-80323126 retained_intron
ENSMUSG00000035504 (Reep6)
receptor accessory protein 6 		ENSMUST00000040081 (Reep6-003) 80330202-80335582 protein_coding
ENSMUST00000105354 (Reep6-005) 80329953-80336441 protein_coding
ENSMUST00000105355 (Reep6-006) 80329953-80336441 protein_coding
ENSMUST00000105357 (Reep6-002) 80329953-80336441 protein_coding
ENSMUST00000105358 (Reep6-001) 80329953-80336441 protein_coding
ENSMUST00000153167 (Reep6-004) 80330198-80334432 retained_intron
ENSMUST00000186864 (Reep6-201) 80330145-80336440 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066P_0001ENSG00000115255ENST00000233596ENST00000395479ENST00000395484ENST00000591735ENSG00000115257ENST00000300954ENST00000441747ENST00000586002ENST00000586074ENST00000586616ENST00000587784ENST00000588195ENST00000588671ENST00000590057ENST00000591201ENST00000591303ENST00000591687ENST00000614078CIL_00066P_0002ENSMUSG00000020131ENSMUST00000020340ENSMUST00000128653ENSMUST00000130521ENSMUST00000135071ENSMUST00000137177ENSMUST00000147132ENSMUSG00000035504ENSMUST00000040081ENSMUST00000105354ENSMUST00000105355ENSMUST00000105357ENSMUST00000105358ENSMUST00000153167ENSMUST00000186864
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066P_0001ENSG00000115255ENST00000233596ENST00000395479ENST00000395484ENST00000591735ENSG00000115257ENST00000300954ENST00000588195ENST00000588671ENST00000591201ENST00000591303CIL_00066P_0002ENSMUSG00000020131ENSMUST00000020340ENSMUST00000128653ENSMUST00000130521ENSMUST00000135071ENSMUST00000137177ENSMUST00000147132ENSMUSG00000035504ENSMUST00000040081ENSMUST00000105355ENSMUST00000105357ENSMUST00000153167ENSMUST00000186864
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115255 ENST00000233596 4.681±0.00 2.392±0.00 0.509±0.00 4.332±4.11 9.467±9.23 0.995±0.61 0.781±0.00 20.469±9.99 119.217±118.97 0.231±0.18 0.621±0.00 9.298±6.37 4.319±1.20 173.988±33.49
ENST00000395479 N/A N/A N/A 4.170±0.00 N/A 1.458±0.00 0.580±0.00 N/A N/A 0.920±0.00 0.403±0.00 N/A 2.111±0.00 N/A
ENST00000395484 N/A N/A 0.637±0.00 N/A N/A 0.399±0.00 0.616±0.00 N/A N/A 1.368±0.00 N/A N/A N/A N/A
ENST00000591735 N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115257 ENST00000300954 N/A N/A N/A 1.388±0.00 N/A N/A N/A N/A N/A 1.040±0.00 N/A N/A N/A 34.051±4.35
ENST00000441747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588195 N/A N/A N/A N/A 0.077±0.00 N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A 40.864±0.00
ENST00000588671 N/A N/A 0.549±0.00 N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A 0.544±0.00 N/A N/A
ENST00000590057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591201 N/A N/A N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591303 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.530±0.00 N/A N/A N/A N/A
ENST00000591687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020131 ENSMUST00000020340 N/A N/A 0.414±0.10 0.202±0.02 N/A 1.521±0.43 N/A N/A 0.740±0.22 0.703±0.00 N/A 1.020±0.08 0.300±0.00 68.386±30.44
ENSMUST00000128653 N/A N/A N/A N/A 0.295±0.00 N/A 0.334±0.00 0.417±0.00 N/A N/A 0.148±0.05 0.299±0.08 N/A N/A
ENSMUST00000130521 1.534±0.43 1.886±0.51 1.074±0.54 0.698±0.00 3.407±0.64 N/A N/A 0.953±0.00 2.115±0.73 N/A 0.587±0.25 1.982±0.00 0.710±0.23 N/A
ENSMUST00000135071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 0.560±0.00 1.308±1.13 29.687±0.00
ENSMUST00000137177 0.380±0.00 0.612±0.05 0.476±0.00 0.271±0.10 1.389±0.00 1.542±0.34 N/A 0.944±0.42 1.427±0.54 1.053±0.19 0.196±0.02 1.133±0.30 0.799±0.42 41.855±5.13
ENSMUST00000147132 2.327±1.03 3.174±0.40 2.525±0.19 1.034±0.29 2.576±1.46 N/A 0.772±0.18 1.056±0.32 2.109±0.33 1.236±0.39 0.833±0.17 1.815±0.59 0.549±0.02 N/A
ENSMUSG00000035504 ENSMUST00000040081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.597±0.00 N/A 1.516±0.00 N/A
ENSMUST00000105354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.088±0.00 N/A
ENSMUST00000105357 12.161±3.04 2.055±0.70 5.351±2.23 0.224±0.00 7.512±3.28 10.538±1.14 0.425±0.18 8.205±0.77 81.408±62.76 8.431±0.65 0.489±0.15 2.677±0.99 13.625±7.10 N/A
ENSMUST00000105358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153167 N/A N/A N/A 0.991±0.00 5.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186864 N/A 2.100±1.03 N/A 1.715±0.75 2.838±0.00 2.090±0.02 0.664±0.20 1.425±0.29 44.908±16.00 N/A 1.094±0.18 0.793±0.34 1.922±0.00 243.661±61.14

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