C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cathepsin D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000236671 CTSD-001 ENSG00000117984 9606 - 11:1752752-1763992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000236671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000236671 250.278±0.00 267.725±0.00 15.564±0.00 68.497±54.09 192.537±170.46 85.469±73.32 121.928±111.56 384.184±345.45 133.277±121.66 181.112±148.15 267.977±256.17 201.142±121.21 369.209±87.36 89.608±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_00048D CIL_00048D_0001 CGP 11:1732410-1759051
CIL_00048K CIL_00048K_0001 CGP 11:1752752-1837521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005764 IDA lysosome
GO:0006508 IEA proteolysis
GO:0008219 IEA cell death
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0043202 TAS lysosomal lumen
GO:0070062 IDA extracellular vesicular exosome

Homologs

No Homologs available.

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