C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor, alpha-induced protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000237289 TNFAIP3-001 ENSG00000118503 9606 + 6:137867444-137883312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237289
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237289 7.164±0.00 6.633±0.00 0.901±0.00 1.802±0.00 0.496±0.00 0.977±0.30 0.689±0.00 5.730±0.00 1.724±0.00 21.225±10.57 7.667±3.46 3.939±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JD CIL_0008JD_0001 VISTA 6:137510749-138112161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001922 ISS B-1 B cell homeostasis
GO:0002020 IPI protease binding
GO:0002237 IDA response to molecule of bacterial origin
GO:0002634 ISS regulation of germinal center formation
GO:0003677 IEA DNA binding
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0006508 IEA proteolysis
GO:0006915 IEA apoptotic process
GO:0006954 IEA inflammatory response
GO:0008270 IEA zinc ion binding
GO:0016579 TAS protein deubiquitination
GO:0016874 IEA ligase activity
GO:0031397 IDA negative regulation of protein ubiquitination
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0032480 TAS negative regulation of type I interferon production
GO:0032703 IMP negative regulation of interleukin-2 production
GO:0032715 ISS negative regulation of interleukin-6 production
GO:0032720 ISS negative regulation of tumor necrosis factor production
GO:0034136 NAS negative regulation of toll-like receptor 2 signaling pathway
GO:0034140 IDA negative regulation of toll-like receptor 3 signaling pathway
GO:0034144 NAS negative regulation of toll-like receptor 4 signaling pathway
GO:0035871 IDA protein K11-linked deubiquitination
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 IPI ubiquitin binding
GO:0043621 IDA protein self-association
GO:0045087 TAS innate immune response
GO:0045732 IDA positive regulation of protein catabolic process
GO:0045779 NAS negative regulation of bone resorption
GO:0045824 ISS negative regulation of innate immune response
GO:0048662 IDA negative regulation of smooth muscle cell proliferation
GO:0050691 NAS regulation of defense response to virus by host
GO:0050728 ISS negative regulation of inflammatory response
GO:0050869 ISS negative regulation of B cell activation
GO:0051259 NAS protein oligomerization
GO:0061043 NAS regulation of vascular wound healing
GO:0070062 IDA extracellular vesicular exosome
GO:0070301 ISS cellular response to hydrogen peroxide
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway
GO:0070536 IDA protein K63-linked deubiquitination
GO:0070936 IDA protein K48-linked ubiquitination
GO:0071108 IDA protein K48-linked deubiquitination
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0072573 IMP tolerance induction to lipopolysaccharide
GO:0090291 NAS negative regulation of osteoclast proliferation
GO:1902042 IDA negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000349 IMP negative regulation of CD40 signaling pathway
GO:2000352 IDA negative regulation of endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019997 Tnfaip3-001 protein_coding Mus_musculus 0 2255
ENSMUST00000105527 Tnfaip3-002 protein_coding Mus_musculus 0 2242
ENSMUST00000154590 Tnfaip3-003 retained_intron Mus_musculus 0 985
ENSMUST00000122863 Tnfaip3-004 protein_coding Mus_musculus 0 444
ENSMUST00000146388 Tnfaip3-005 protein_coding Mus_musculus 0 344

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