C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: msh homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239243 MSX2-001 ENSG00000120149 9606 + 5:174724533-174730893 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239243
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239243 0.176±0.00 0.208±0.00 0.179±0.14 0.348±0.04 0.114±0.00 0.138±0.12 0.250±0.00 1.025±1.02 0.025±0.01 0.488±0.00 0.628±0.37 16.194±4.15 1.816±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086T CIL_00086T_0001 VISTA 5:174433171-175034831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001503 IEA ossification
GO:0001649 ISS osteoblast differentiation
GO:0002063 IEA chondrocyte development
GO:0002076 IEA osteoblast development
GO:0003148 IEA outflow tract septum morphogenesis
GO:0003151 IEA outflow tract morphogenesis
GO:0003198 IEA epithelial to mesenchymal transition involved in endocardial cushion formation
GO:0003416 IEA endochondral bone growth
GO:0003677 IEA DNA binding
GO:0003712 ISS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0009952 IEA anterior/posterior pattern specification
GO:0023019 IEA signal transduction involved in regulation of gene expression
GO:0030326 IEA embryonic limb morphogenesis
GO:0030509 IEA BMP signaling pathway
GO:0030513 IEA positive regulation of BMP signaling pathway
GO:0032792 IEA negative regulation of CREB transcription factor activity
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0035313 IEA wound healing, spreading of epidermal cells
GO:0035880 IEA embryonic nail plate morphogenesis
GO:0042060 IEA wound healing
GO:0042476 IEA odontogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0042981 IEA regulation of apoptotic process
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045599 IEA negative regulation of fat cell differentiation
GO:0045617 IEA negative regulation of keratinocyte differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048863 IEA stem cell differentiation
GO:0051216 IEA cartilage development
GO:0051795 IEA positive regulation of catagen
GO:0060346 IEA bone trabecula formation
GO:0060349 IEA bone morphogenesis
GO:0060363 TAS cranial suture morphogenesis
GO:0060364 IEA frontal suture morphogenesis
GO:0060444 IEA branching involved in mammary gland duct morphogenesis
GO:0061180 IEA mammary gland epithelium development
GO:0061312 IEA BMP signaling pathway involved in heart development
GO:0070166 IEA enamel mineralization
GO:0071363 IEA cellular response to growth factor stimulus
GO:0071392 IEA cellular response to estradiol stimulus
GO:0090427 IEA activation of meiosis
GO:2000678 ISS negative regulation of transcription regulatory region DNA binding
GO:2001055 IEA positive regulation of mesenchymal cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021922 Msx2-001 protein_coding Mus_musculus 0 1229
ENSMUST00000188606 Msx2-002 retained_intron Mus_musculus 0 475
ENSMUST00000047793 Hoxd1-001 protein_coding Mus_musculus 0.00001 57

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