C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047793 Hoxd1-001 ENSMUSG00000042448 10090 + 2:74762980-74765142 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000047793
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000047793 0.019±0.00 0.018±0.01 0.235±0.20 0.017±0.00 0.027±0.01 0.038±0.01 0.015±0.00 0.041±0.02 0.049±0.03 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017R CIL_00017R_0002 CGP 2:74762980-74878431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019233 IMP sensory perception of pain
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IMP embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239243 MSX2-001 protein_coding Homo_sapiens 0.00001 57
ENST00000331462 HOXD1-001 protein_coding Homo_sapiens 0 292
ENST00000507785 MSX2-002 protein_coding Homo_sapiens 0.000006 57

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