C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: msh homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188606 Msx2-002 ENSMUSG00000021469 10090 - 13:53471506-53473074 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyLungOvaryTestisENSMUST00000188606
Transcript ID Adrenal Kidney Lung Ovary Testis
ENSMUST00000188606 0.139±0.00 0.055±0.00 0.022±0.00 0.362±0.00 0.096±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086T CIL_00086T_0002 VISTA 13:53163203-53764849

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239243 MSX2-001 protein_coding Homo_sapiens 0 475
ENST00000382723 MSX1-001 protein_coding Homo_sapiens 0.0000008 60
ENST00000507785 MSX2-002 protein_coding Homo_sapiens 0 440
ENST00000584100 MSX2P1-001 processed_pseudogene Homo_sapiens 0 268

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