C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: teashirt zinc finger homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240587 TSHZ3-001 ENSG00000121297 9606 - 19:31274945-31349547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240587
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240587 2.965±0.00 1.715±0.00 2.078±1.33 2.151±0.00 6.001±0.00 0.979±0.00 1.047±0.00 1.197±0.78 2.323±1.40 0.566±0.41 4.145±3.95 1.431±0.25 3.341±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NK CIL_0004NK_0002 CGP 19:30228290-31349547
CIL_000831 CIL_000831_0001 VISTA 19:30796152-31397164
CIL_0007OB CIL_0007OB_0004 UCNEbase 19:30930448-32267062
CIL_000830 CIL_000830_0001 VISTA 19:31015544-31616146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEA metanephros development
GO:0001657 IEA ureteric bud development
GO:0001701 IEA in utero embryonic development
GO:0002087 ISS regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0030324 IEA lung development
GO:0030426 IEA growth cone
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048745 IEA smooth muscle tissue development
GO:0050881 IEA musculoskeletal movement
GO:0050975 IEA sensory perception of touch
GO:0051152 IEA positive regulation of smooth muscle cell differentiation
GO:0060993 IEA kidney morphogenesis
GO:0072105 IEA ureteric peristalsis
GO:0072193 IEA ureter smooth muscle cell differentiation
GO:0072195 IEA kidney smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021641 Tshz3-001 protein_coding Mus_musculus 0 5332
ENSDART00000109493 TSHZ2-201 protein_coding Danio_rerio 8.40779e-45 187
ENSMUST00000176413 Tshz3-002 processed_transcript Mus_musculus 7e-26 124

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