C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: teashirt zinc finger family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021641 Tshz3-001 ENSMUSG00000021217 10090 + 7:36698118-36773553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021641 7.678±4.60 1.082±0.09 5.241±1.00 4.340±1.90 1.492±0.41 1.499±0.14 0.700±0.11 0.648±0.04 0.224±0.10 1.736±0.09 0.296±0.04 3.364±1.69 0.310±0.19 0.168±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OB CIL_0007OB_0005 UCNEbase 7:35865981-38051259
CIL_000830 CIL_000830_0002 VISTA 7:36431579-37032162
CIL_000831 CIL_000831_0002 VISTA 7:36644652-37245744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEP metanephros development
GO:0001657 IMP ureteric bud development
GO:0001701 IMP in utero embryonic development
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0030324 IMP lung development
GO:0030426 IEA growth cone
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048745 IMP smooth muscle tissue development
GO:0050881 IMP musculoskeletal movement
GO:0050975 IMP sensory perception of touch
GO:0051152 IMP positive regulation of smooth muscle cell differentiation
GO:0060993 IMP kidney morphogenesis
GO:0072105 IMP ureteric peristalsis
GO:0072193 IMP ureter smooth muscle cell differentiation
GO:0072195 IMP kidney smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240587 TSHZ3-001 protein_coding Homo_sapiens 0 5332
ENST00000322038 TSHZ1-001 protein_coding Homo_sapiens 0 462
ENST00000558569 TSHZ3-002 protein_coding Homo_sapiens 1e-28 130
ENST00000560707 TSHZ3-003 processed_transcript Homo_sapiens 0 676
ENST00000560918 TSHZ1-002 protein_coding Homo_sapiens 0 320
ENST00000580243 TSHZ1-005 protein_coding Homo_sapiens 0 462
ENST00000584217 TSHZ1-004 retained_intron Homo_sapiens 0 462

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