C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000242719 RNF11-001 ENSG00000123091 9606 + 1:51236271-51273455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242719
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242719 8.840±0.00 4.327±0.00 5.553±0.00 30.739±9.74 10.379±2.06 9.074±4.40 8.386±0.09 6.682±4.09 8.629±5.52 12.139±0.98 3.942±0.23 20.813±10.74 15.116±8.72 8.630±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WB CIL_0006WB_0002 CGP 1:51236271-51345116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0003677 TAS DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030284 Rnf11-001 protein_coding Mus_musculus 0 2726
ENSMUST00000064167 Rnf11-002 protein_coding Mus_musculus 0 2222
ENSMUST00000145980 Rnf11-003 protein_coding Mus_musculus 0 747

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