C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec61 alpha 1 subunit (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243253 SEC61A1-001 ENSG00000058262 9606 + 3:128052369-128071682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243253 72.717±0.00 54.498±0.00 4.316±0.00 5.380±1.37 11.119±1.69 20.845±14.27 9.545±6.24 22.994±1.03 39.123±35.56 15.411±9.34 13.575±11.56 45.325±29.54 105.308±13.79 23.907±16.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 IPI protein binding
GO:0005791 IEA rough endoplasmic reticulum
GO:0006614 IMP SRP-dependent cotranslational protein targeting to membrane
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0007029 IMP endoplasmic reticulum organization
GO:0015031 IEA protein transport
GO:0016020 IEA:IDA membrane
GO:0016049 IMP cell growth
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0034341 IEA response to interferon-gamma
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0043022 ISS ribosome binding
GO:0045047 ISS protein targeting to ER

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032168 Sec61a1-001 protein_coding Mus_musculus 0 2002
ENSDART00000034730 sec61a1-001 protein_coding Danio_rerio 0 1092
ENSDART00000049425 sec61al2-001 protein_coding Danio_rerio 0 1075
ENSMUST00000145421 Sec61a1-002 retained_intron Mus_musculus 0 1051
ENSMUST00000136103 Sec61a1-009 processed_transcript Mus_musculus 0 446

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