C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: snail family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244050 SNAI1-001 ENSG00000124216 9606 + 20:49982999-49988886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244050 3.417±0.00 7.533±0.00 0.330±0.00 1.164±0.00 1.562±0.99 1.441±1.33 0.641±0.00 2.045±0.00 0.577±0.42 16.022±0.00 1.169±0.00 3.853±2.38 10.590±5.39 2.137±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_0006FM CIL_0006FM_0001 CGP 20:49936336-49988886
CIL_0001TN CIL_0001TN_0001 CGP 20:49982999-50115959

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001649 IEP osteoblast differentiation
GO:0001707 ISS mesoderm formation
GO:0001837 ISS epithelial to mesenchymal transition
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007498 IEA mesoderm development
GO:0010718 TAS positive regulation of epithelial to mesenchymal transition
GO:0010957 IDA negative regulation of vitamin D biosynthetic process
GO:0016477 IEA cell migration
GO:0019900 IPI kinase binding
GO:0030335 IMP positive regulation of cell migration
GO:0031069 IEA hair follicle morphogenesis
GO:0043518 IMP negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0060021 IEA palate development
GO:0060536 IEA cartilage morphogenesis
GO:0060707 IEA trophoblast giant cell differentiation
GO:0060806 IEA negative regulation of cell differentiation involved in embryonic placenta development
GO:0060972 IEA left/right pattern formation
GO:0061314 ISS Notch signaling involved in heart development
GO:1902230 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000810 IMP regulation of tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052631 Snai1-001 protein_coding Mus_musculus 0 822
ENSDART00000033127 scrt1a-201 protein_coding Danio_rerio 1e-18 99

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