C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124226-ENSG00000124216 CGP 9606 20:49936336-49988886
GeneTranscriptPositionBiotype
ENSG00000124216 (SNAI1)
snail family zinc finger 1 		ENST00000244050 (SNAI1-001) 49982999-49988886 protein_coding
ENSG00000124226 (RNF114)
ring finger protein 114 		ENST00000244061 (RNF114-001) 49936348-49953892 protein_coding
ENST00000622920 (RNF114-004) 49936407-49952899 protein_coding
ENST00000622999 (RNF114-002) 49936377-49953878 nonsense_mediated_decay
ENST00000623528 (RNF114-006) 49936336-49952152 nonsense_mediated_decay
ENST00000623732 (RNF114-008) 49936399-49946178 nonsense_mediated_decay
ENST00000624620 (RNF114-007) 49936399-49941971 retained_intron
ENST00000624666 (RNF114-005) 49943931-49952300 retained_intron
ENST00000625177 (RNF114-009) 49936399-49952128 protein_coding
ENSG00000206710 (RNU6-147P)
RNA, U6 small nuclear 147, pseudogene 		ENST00000383983 (RNU6-147P-201) 49972106-49972212 snRNA
ENSG00000229222 (KRT18P4)
keratin 18 pseudogene 4 		ENST00000422599 (KRT18P4-001) 49956745-49958032 processed_pseudogene
CIL_0006FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006418-ENSMUSG00000042821 CGP 10090 2:167492645-167542814
GeneTranscriptPositionBiotype
ENSMUSG00000006418 (Rnf114)
ring finger protein 114 		ENSMUST00000078050 (Rnf114-001) 167503089-167516173 protein_coding
ENSMUST00000109214 (Rnf114-002) 167492645-167516166 protein_coding
ENSMUST00000127939 (Rnf114-003) 167503446-167516164 nonsense_mediated_decay
ENSMUSG00000042821 (Snai1)
snail family zinc finger 1 		ENSMUST00000052631 (Snai1-001) 167538195-167542814 protein_coding
ENSMUSG00000047030 (Spata2)
spermatogenesis associated 2 		ENSMUST00000057627 (Spata2-001) 167481133-167492887 protein_coding
ENSMUST00000109211 (Spata2-002) 167481433-167492845 protein_coding
ENSMUST00000126389 (Spata2-003) 167485355-167492872 processed_transcript
ENSMUST00000147051 (Spata2-006) 167484520-167485830 retained_intron
ENSMUST00000154770 (Spata2-004) 167485513-167492878 processed_transcript
ENSMUST00000155875 (Spata2-005) 167485406-167492845 processed_transcript
ENSMUSG00000082687 (Gm11474)
predicted gene 11474 		ENSMUST00000120814 (Gm11474-001) 167535166-167535442 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FM_0001ENSG00000124216ENST00000244050ENSG00000124226ENST00000244061ENST00000622920ENST00000622999ENST00000623528ENST00000623732ENST00000624620ENST00000624666ENST00000625177ENSG00000206710ENST00000383983ENSG00000229222ENST00000422599CIL_0006FM_0002ENSMUSG00000006418ENSMUST00000078050ENSMUST00000109214ENSMUST00000127939ENSMUSG00000042821ENSMUST00000052631ENSMUSG00000047030ENSMUST00000057627ENSMUST00000109211ENSMUST00000126389ENSMUST00000147051ENSMUST00000154770ENSMUST00000155875ENSMUSG00000082687ENSMUST00000120814
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FM_0001ENSG00000124216ENST00000244050ENSG00000124226ENST00000244061ENST00000622920ENST00000622999ENST00000623528ENST00000624620ENST00000624666ENST00000625177ENSG00000206710ENST00000383983ENSG00000229222ENST00000422599CIL_0006FM_0002ENSMUSG00000006418ENSMUST00000078050ENSMUST00000127939ENSMUSG00000042821ENSMUST00000052631ENSMUSG00000047030ENSMUST00000057627ENSMUST00000109211ENSMUSG00000082687ENSMUST00000120814
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124216 ENST00000244050 3.417±0.00 7.533±0.00 0.330±0.00 1.164±0.00 1.562±0.99 1.441±1.33 0.641±0.00 2.045±0.00 0.577±0.42 16.022±0.00 1.169±0.00 3.853±2.38 10.590±5.39 2.137±0.56
ENSG00000124226 ENST00000244061 11.277±0.00 16.951±0.00 3.390±0.00 8.464±4.07 8.340±0.01 10.855±3.45 5.942±3.96 11.147±7.05 7.762±2.78 10.813±5.46 8.051±4.85 13.294±6.95 17.100±8.90 17.326±5.15
ENST00000622920 N/A N/A N/A N/A N/A N/A 1.864±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000622999 N/A N/A N/A N/A 6.141±0.00 N/A 3.726±0.00 12.869±0.00 N/A N/A N/A 10.326±2.32 5.341±0.00 N/A
ENST00000623528 10.535±0.00 N/A N/A 9.380±5.37 N/A N/A 2.013±0.00 N/A 12.108±0.00 41.667±0.00 22.944±0.00 15.966±0.00 10.674±2.95 78.797±4.25
ENST00000623732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.904±0.00 N/A N/A
ENST00000624666 N/A 3.857±0.00 N/A N/A 4.309±0.00 1.550±0.00 N/A N/A 1.755±0.00 3.162±1.50 N/A 1.979±0.00 N/A N/A
ENST00000625177 11.766±0.00 N/A 6.578±0.00 N/A N/A N/A N/A 7.002±0.00 N/A N/A 7.959±0.00 N/A N/A 42.177±16.55
ENSG00000206710 ENST00000383983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.526±0.00
ENSG00000229222 ENST00000422599 0.169±0.00 0.141±0.00 0.565±0.00 0.060±0.03 0.744±0.64 0.432±0.39 0.057±0.04 0.185±0.10 0.180±0.08 0.299±0.15 0.178±0.00 0.363±0.24 0.116±0.08 0.186±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006418 ENSMUST00000078050 13.335±1.99 11.709±1.83 12.670±2.13 29.600±4.42 18.045±3.64 20.672±2.86 14.435±0.61 17.705±2.89 16.576±3.07 20.040±1.11 5.243±0.96 17.120±6.97 10.583±6.26 9.162±3.51
ENSMUST00000109214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127939 23.809±3.83 34.251±2.95 20.513±2.84 18.747±5.03 36.696±7.89 26.884±3.54 21.081±8.37 27.449±2.68 17.659±6.67 38.464±3.64 8.144±1.76 26.975±6.08 13.293±5.68 11.175±2.80
ENSMUSG00000042821 ENSMUST00000052631 15.276±7.69 10.013±0.58 13.661±3.44 2.092±1.58 13.564±5.52 8.073±0.79 2.538±0.78 3.786±0.65 1.188±0.53 23.242±2.92 0.577±0.14 15.925±7.27 25.351±18.98 2.317±1.14
ENSMUSG00000047030 ENSMUST00000057627 9.537±0.43 13.172±3.16 6.495±0.85 11.039±4.18 11.999±2.23 24.739±1.09 4.967±0.99 11.275±1.60 4.667±1.42 10.435±1.18 4.878±0.95 12.725±4.56 6.292±2.96 6.529±0.25
ENSMUST00000109211 N/A N/A N/A 9.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082687 ENSMUST00000120814 N/A N/A N/A 0.073±0.00 1.702±1.20 0.739±0.00 N/A N/A 0.217±0.05 N/A N/A 1.610±0.92 0.707±0.52 0.631±0.00

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