C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244769 ATXN1-001 ENSG00000124788 9606 - 6:16299112-16761456 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverLungOvaryENST00000244769
Transcript ID Brain Kidney Liver Lung Ovary
ENST00000244769 3.653±2.11 0.359±0.00 0.324±0.00 0.956±0.00 0.943±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RQ CIL_0003RQ_0001 CGP 6:16238580-16761491

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008022 IPI protein C-terminus binding
GO:0008219 IEA cell death
GO:0008266 IDA poly(U) RNA binding
GO:0008344 IEA adult locomotory behavior
GO:0008542 IEA visual learning
GO:0016363 IDA nuclear matrix
GO:0034046 IDA poly(G) binding
GO:0042272 IDA nuclear RNA export factor complex
GO:0042326 IEA negative regulation of phosphorylation
GO:0042405 IDA nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043569 IEA negative regulation of insulin-like growth factor receptor signaling pathway
GO:0043621 IDA protein self-association
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IEA lung alveolus development
GO:0051168 IDA nuclear export
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167708 Atxn1-202 protein_coding Mus_musculus 0 2102
ENSMUST00000091628 Atxn1-201 protein_coding Mus_musculus 0 2102
ENSMUST00000180110 Atxn1-203 protein_coding Mus_musculus 0 2002

Loading