C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167708 Atxn1-202 ENSMUSG00000046876 10090 - 13:45549758-45964991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167708 3.263±1.78 7.118±0.92 2.431±0.00 1.308±0.26 3.924±1.82 5.315±1.52 1.097±0.26 4.680±0.67 1.252±0.82 3.767±1.96 1.609±0.82 5.315±2.19 0.535±0.21 0.426±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RQ CIL_0003RQ_0002 CGP 13:45507444-45964991

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008022 ISS protein C-terminus binding
GO:0008266 ISS poly(U) RNA binding
GO:0008344 IMP adult locomotory behavior
GO:0008542 IMP visual learning
GO:0016363 ISS nuclear matrix
GO:0034046 ISS poly(G) binding
GO:0042272 ISS nuclear RNA export factor complex
GO:0042326 IMP negative regulation of phosphorylation
GO:0042405 ISS nuclear inclusion body
GO:0043569 IMP negative regulation of insulin-like growth factor receptor signaling pathway
GO:0043621 ISS protein self-association
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IGI lung alveolus development
GO:0051168 ISS nuclear export
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244769 ATXN1-001 protein_coding Homo_sapiens 0 2102
ENST00000436367 ATXN1-201 protein_coding Homo_sapiens 0 2102
ENST00000467008 ATXN1-004 processed_transcript Homo_sapiens 0 335
ENST00000473388 ATXN1-008 processed_transcript Homo_sapiens 0 446
ENST00000479680 ATXN1-006 processed_transcript Homo_sapiens 0 335
ENST00000483954 ATXN1-009 processed_transcript Homo_sapiens 0 237
ENST00000492857 ATXN1-003 processed_transcript Homo_sapiens 0 246
ENST00000498374 ATXN1-005 processed_transcript Homo_sapiens 0 267

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