C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein family, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246070 LAMP5-001 ENSG00000125869 9606 + 20:9514361-9530524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000246070
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000246070 0.520±0.00 0.143±0.00 20.769±4.07 0.521±0.24 0.826±0.00 0.048±0.00 0.527±0.00 0.616±0.00 9.647±10.83 0.547±0.51 0.875±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043I CIL_00043I_0001 CGP 20:9068763-9530524
CIL_00035V CIL_00035V_0001 CGP 20:9514358-9839041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0010008 IDA endosome membrane
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030659 ISS cytoplasmic vesicle membrane
GO:0031901 ISS early endosome membrane
GO:0032584 ISS growth cone membrane
GO:0032590 ISS dendrite membrane
GO:0033116 IDA endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0055038 ISS recycling endosome membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057503 Lamp5-001 protein_coding Mus_musculus 0 992
ENSMUST00000123436 Lamp5-003 processed_transcript Mus_musculus 0 708
ENSMUST00000143777 Lamp5-002 retained_intron Mus_musculus 0 429
ENSMUST00000144403 Lamp5-005 protein_coding Mus_musculus 0 331
ENSMUST00000154674 Lamp5-004 processed_transcript Mus_musculus 0 272

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