C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246314 AGO3-002 ENSG00000126070 9606 + 1:35931258-36056462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartMuscleOvaryPlacentaTestisENST00000246314
Transcript ID Breast Colon Heart Muscle Ovary Placenta Testis
ENST00000246314 3.073±0.00 2.227±0.00 1.126±0.00 0.897±0.00 2.909±0.00 0.557±0.09 2.565±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016442 IEA RISC complex
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0072091 IMP regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069097 Ago3-001 protein_coding Mus_musculus 0 3066
ENSMUST00000127800 Ago1-002 nonsense_mediated_decay Mus_musculus 0 1110
ENSMUST00000097888 Ago1-001 protein_coding Mus_musculus 0 1110
ENSMUST00000176315 Ago1-005 protein_coding Mus_musculus 0 941
ENSMUST00000132123 Ago3-002 protein_coding Mus_musculus 0 636
ENSMUST00000127831 Ago3-003 protein_coding Mus_musculus 0 383
ENSMUST00000123233 Ago3-006 processed_transcript Mus_musculus 0 327
ENSMUST00000151179 Ago3-004 processed_transcript Mus_musculus 0 200
ENSMUST00000155645 Ago3-005 processed_transcript Mus_musculus 3e-38 165

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