C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069097 Ago3-001 ENSMUSG00000028842 10090 - 4:126332732-126429556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069097 1.524±0.58 1.438±0.19 2.357±0.11 1.945±1.11 1.528±0.19 1.085±0.12 0.960±0.07 1.223±0.20 0.766±0.22 2.004±0.12 0.368±0.17 1.813±0.57 1.093±0.12 0.883±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JR CIL_0002JR_0002 CGP 4:126331704-126468583

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005737 IEA cytoplasm
GO:0006402 ISS mRNA catabolic process
GO:0016020 IEA membrane
GO:0016442 IEA RISC complex
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding
GO:0072091 IEA regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220592 AGO2-001 protein_coding Homo_sapiens 0 878
ENST00000246314 AGO3-002 protein_coding Homo_sapiens 0 3066
ENST00000324350 AGO3-001 protein_coding Homo_sapiens 0 990
ENST00000373191 AGO3-003 protein_coding Homo_sapiens 0 4058
ENST00000373204 AGO1-002 protein_coding Homo_sapiens 0 1243
ENST00000373206 AGO1-001 protein_coding Homo_sapiens 0 1243
ENST00000397828 AGO3-201 protein_coding Homo_sapiens 0 990
ENST00000471099 AGO3-007 retained_intron Homo_sapiens 0 438
ENST00000491443 AGO3-004 retained_intron Homo_sapiens 0 667
ENST00000519980 AGO2-002 protein_coding Homo_sapiens 0 222
ENST00000520628 AGO2-010 processed_transcript Homo_sapiens 7.00649e-45 183
ENST00000523609 AGO2-003 nonsense_mediated_decay Homo_sapiens 0 878

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