C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paroxysmal nonkinesigenic dyskinesia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248451 PNKD-003 ENSG00000127838 9606 + 2:218270392-218272947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248451 18.942±0.00 35.548±0.00 3.726±0.00 29.305±18.73 29.547±27.62 29.704±26.07 19.188±15.45 30.741±26.69 2.726±0.00 17.051±14.48 8.905±2.61 25.145±16.31 35.445±6.80 33.448±14.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VJ CIL_0005VJ_0001 CGP 2:218264123-218346793
CIL_0005VI CIL_0005VI_0001 CGP 2:218270392-218346793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004416 IEA hydroxyacylglutathione hydrolase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006750 IEA glutathione biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113805 Pnkd-003 protein_coding Mus_musculus 0 761
ENSMUST00000087226 Pnkd-002 protein_coding Mus_musculus 0 512
ENSMUST00000152492 Pnkd-006 retained_intron Mus_musculus 0 435
ENSMUST00000027370 Pnkd-001 protein_coding Mus_musculus 0 348
ENSMUST00000129219 Pnkd-005 retained_intron Mus_musculus 0 344
ENSMUST00000138620 Pnkd-007 retained_intron Mus_musculus 0 342

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