C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paroxysmal nonkinesiogenic dyskinesia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087226 Pnkd-002 ENSMUSG00000026179 10090 + 1:74285055-74353694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000087226
Transcript ID Bladder Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000087226 2.178±0.29 1.488±0.00 2.256±0.00 0.820±0.28 2.739±1.26 3.540±2.04 3.029±1.26 2.195±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WL CIL_0007WL_0002 VISTA 1:73730234-74332407
CIL_0005VJ CIL_0005VJ_0002 CGP 1:74279840-74353694
CIL_0005VI CIL_0005VI_0002 CGP 1:74284930-74353694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004416 IEA hydroxyacylglutathione hydrolase activity
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006750 IEA glutathione biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0016020 ISO membrane
GO:0032225 IMP regulation of synaptic transmission, dopaminergic
GO:0042053 IMP regulation of dopamine metabolic process
GO:0050884 IMP neuromuscular process controlling posture

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248451 PNKD-003 protein_coding Homo_sapiens 0 512
ENST00000258362 PNKD-002 protein_coding Homo_sapiens 0 1240
ENST00000273077 PNKD-001 protein_coding Homo_sapiens 0 1240
ENST00000421952 DDN-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000435914 PNKDP1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000436005 PNKD-007 protein_coding Homo_sapiens 0 1216
ENST00000469689 PNKD-004 retained_intron Homo_sapiens 0 372
ENST00000472650 PNKD-005 processed_transcript Homo_sapiens 0 198
ENST00000483797 PNKD-008 retained_intron Homo_sapiens 3e-27 124

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