C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma complex associated protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248846 TUBGCP6-001 ENSG00000128159 9606 - 22:50217689-50244564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000248846
Transcript ID Adipose Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000248846 2.191±0.00 1.348±0.29 0.922±0.24 0.833±0.00 0.734±0.32 1.592±0.48 0.865±0.00 3.667±0.00 0.825±0.22 1.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000097 CIL_000097_0001 CGP 22:50200979-50244992
CIL_000096 CIL_000096_0001 CGP 22:50217689-50251405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000922 IEA spindle pole
GO:0005813 IDA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005829 TAS cytosol
GO:0005874 IEA microtubule
GO:0007020 IDA microtubule nucleation
GO:0008017 IDA microtubule binding
GO:0008274 IDA gamma-tubulin ring complex
GO:0016020 IDA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041656 Tubgcp6-003 protein_coding Mus_musculus 0 1310
ENSMUST00000109353 Tubgcp6-001 protein_coding Mus_musculus 0 1310
ENSMUST00000166480 Tubgcp6-011 nonsense_mediated_decay Mus_musculus 0 809
ENSMUST00000163290 Tubgcp6-005 nonsense_mediated_decay Mus_musculus 0 732
ENSMUST00000168256 Tubgcp6-007 retained_intron Mus_musculus 0 641
ENSDART00000122952 TUBGCP6-201 protein_coding Danio_rerio 0 401
ENSMUST00000166994 Tubgcp6-010 retained_intron Mus_musculus 0 390
ENSMUST00000169208 Tubgcp6-009 retained_intron Mus_musculus 0 388
ENSMUST00000164717 Tubgcp6-006 retained_intron Mus_musculus 6e-32 145

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