C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neutrophil cytosolic factor 4, 40kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248899 NCF4-001 ENSG00000100365 9606 + 22:36860988-36878015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000248899
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000248899 5.120±0.00 12.641±0.00 0.236±0.00 0.738±0.35 1.379±0.11 1.346±1.27 1.612±0.99 2.527±0.10 6.780±3.34 2.835±1.11 24.831±9.76 0.982±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F3 CIL_0006F3_0002 CGP 22:36800684-36878015
CIL_0003GY CIL_0003GY_0001 CGP 22:36860988-36940449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 IPI:IEA protein binding
GO:0005829 IDA cytosol
GO:0006955 TAS immune response
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016176 IMP superoxide-generating NADPH oxidase activator activity
GO:0032010 TAS phagolysosome
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0035091 IEA phosphatidylinositol binding
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0043020 IDA NADPH oxidase complex
GO:0043085 IMP positive regulation of catalytic activity
GO:0046983 TAS protein dimerization activity
GO:0051701 TAS interaction with host
GO:0055114 TAS oxidation-reduction process
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096357 Ncf4-001 protein_coding Mus_musculus 0 1020
ENSMUST00000148646 Ncf4-006 retained_intron Mus_musculus 0 261

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