C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248929 SGSM3-001 ENSG00000100359 9606 + 22:40370611-40410289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000248929
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000248929 11.037±0.00 1.947±0.00 6.658±0.00 8.532±3.70 7.597±2.51 4.885±1.98 10.964±8.07 7.570±3.53 26.473±0.00 17.482±2.86 29.591±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W1 CIL_0005W1_0001 CGP 22:40370591-40636702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA:IDA Rab GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005829 IDA cytosol
GO:0007050 IEA cell cycle arrest
GO:0017137 IDA Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032483 IEP regulation of Rab protein signal transduction
GO:0032486 IEP Rap protein signal transduction
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IDA positive regulation of GTP catabolic process
GO:0048227 IMP plasma membrane to endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124845 Sgsm3-002 processed_transcript Mus_musculus 0 2728
ENSMUST00000139517 Sgsm3-001 protein_coding Mus_musculus 0 2710
ENSMUST00000042506 Sgsm3-201 protein_coding Mus_musculus 0 2710
ENSMUST00000149345 Sgsm3-010 retained_intron Mus_musculus 0 915
ENSMUST00000154904 Sgsm3-008 protein_coding Mus_musculus 0 673
ENSMUST00000138550 Sgsm3-007 retained_intron Mus_musculus 0 641
ENSMUST00000132039 Sgsm3-012 retained_intron Mus_musculus 0 536
ENSMUST00000134511 Sgsm3-011 retained_intron Mus_musculus 0 468
ENSMUST00000134559 Sgsm3-009 retained_intron Mus_musculus 0 425
ENSMUST00000156783 Sgsm3-013 retained_intron Mus_musculus 0 398

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