C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calumenin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249364 CALU-001 ENSG00000128595 9606 + 7:128739342-128771474 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249364 36.229±0.00 26.100±0.00 3.081±0.00 7.440±2.82 23.397±6.95 25.954±17.29 38.595±28.24 14.219±10.78 18.427±3.45 22.107±13.26 9.480±6.39 31.810±9.86 64.336±22.62 19.017±16.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FD CIL_0004FD_0001 CGP 7:128709061-128771807
CIL_0005UE CIL_0005UE_0002 CGP 7:128739292-128775790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005783 IDA endoplasmic reticulum
GO:0005794 TAS Golgi apparatus
GO:0007596 TAS blood coagulation
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030168 TAS platelet activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031779 Calu-001 protein_coding Mus_musculus 0 1986
ENSMUST00000090481 Calu-002 protein_coding Mus_musculus 0 1698
ENSMUST00000172974 Calu-009 protein_coding Mus_musculus 0 968
ENSMUST00000174096 Calu-005 nonsense_mediated_decay Mus_musculus 0 808
ENSMUST00000173216 Calu-007 protein_coding Mus_musculus 0 795
ENSMUST00000156163 Calu-003 protein_coding Mus_musculus 0 688
ENSMUST00000138523 Calu-004 processed_transcript Mus_musculus 0 580
ENSMUST00000174280 Calu-006 protein_coding Mus_musculus 0 462
ENSMUST00000173694 Calu-008 protein_coding Mus_musculus 0 436
ENSMUST00000172607 Calu-010 protein_coding Mus_musculus 0 363

Loading