C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein, 23kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249647 SNAP23-001 ENSG00000092531 9606 + 15:42495260-42533061 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249647
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249647 1.575±0.00 1.507±0.00 4.762±0.00 4.492±0.00 1.645±0.00 2.132±0.00 4.437±0.00 5.058±0.00 0.400±0.00 5.394±2.10 15.599±2.52 5.682±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0001 CGP 15:42412823-42545356
CIL_0005PJ CIL_0005PJ_0001 CGP 15:42491233-42548802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006887 IEA exocytosis
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006903 TAS vesicle targeting
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0042581 IDA specific granule
GO:0042582 IDA azurophil granule
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0061024 TAS membrane organization
GO:0061025 TAS membrane fusion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028743 Snap23-003 protein_coding Mus_musculus 0 795
ENSMUST00000110711 Snap23-001 protein_coding Mus_musculus 0 795
ENSMUST00000142278 Snap23-005 protein_coding Mus_musculus 0 630
ENSMUST00000116437 Snap23-002 protein_coding Mus_musculus 0 436
ENSMUST00000150611 Snap23-009 nonsense_mediated_decay Mus_musculus 0 364
ENSMUST00000153580 Snap23-006 protein_coding Mus_musculus 0 351
ENSMUST00000130759 Snap23-008 processed_transcript Mus_musculus 0 331
ENSMUST00000137144 Snap23-004 retained_intron Mus_musculus 9.99995e-41 172

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